GLACIER

Graphical Launchpad for Analysis, Computation, Inference and Explication of Results

GLACIER is a desktop application for orchestrating bioinformatics workflows. It provides a graphical interface for discovering, installing, configuring, running, and monitoring computational pipelines powered by Nextflow and Docker.

Start here

• Getting started
• Tutorial: running raccoon-nf

Reference

• Catalogues
  • Adding a catalogue
  • Browsing a catalogue
  • Installing workflows from a catalogue
  • Organising catalogue contents
  • Checking for updates
  • Adding user workflows
  • Removing a catalogue
  • Default parameters
• Workflows
  • Installing a workflow
  • Configuring parameters
  • Resource requirements
  • Launching a workflow
  • Resume and restart
  • What happens after launch
• Monitoring runs
  • Header controls
  • Progress tab
  • Reports tab
  • Logs tab
• Instances
  • Instances page
  • Viewing instance details
  • Deleting an instance
  • Instance directory layout
• Settings
  • General
  • Visual options
  • Language
  • Environment
  • Advanced options
  • Licenses
• Shards
  • Importing a shard
• Web server deployment
  • Building and starting
  • How it works
  • Differences from desktop mode
  • Browser compatibility
• FAQ / Troubleshooting
  • General
  • Catalogue issues
  • Workflow issues
  • Performance
  • Environment
  • Web deployment

Quick links

• GitHub: ARTIC-Kraemer-Lab/GLACIER

• Issue tracker: ARTIC-Kraemer-Lab/GLACIER#issues

• ReadTheDocs: https://glacier.readthedocs.io